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MT
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
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Cornea
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Dura mater
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Liver
Lung
Lymphoid tissue
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Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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270 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANKLE1
ENSSSCG00000037099
ENSG00000160117
Ankyrin repeat and LEM domain containing 1
Tissue enhanced
Detected in many
dura mater:
11.3
lymphoid tissue:
12.9
upper respiratory system:
10.5
APAF1
ENSSSCG00000000884
ENSG00000120868
Apoptotic peptidase activating factor 1
Low tissue specificity
Detected in all
ARHGEF39
ENSSSCG00000005314
ENSG00000137135
Rho guanine nucleotide exchange factor 39
Tissue enhanced
Detected in many
lymphoid tissue:
33.4
testis:
37.3
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASPM
ENSSSCG00000010896
ENSG00000066279
Abnormal spindle microtubule assembly
Tissue enhanced
Detected in many
lymphoid tissue:
29.3
ATAD2
ENSSSCG00000005983
ENSG00000156802
ATPase family, AAA domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
testis:
37.3
ATAD5
ENSSSCG00000035954
ENSG00000176208
ATPase family, AAA domain containing 5
Tissue enhanced
Detected in many
lymphoid tissue:
27.7
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
ATRIP
ENSSSCG00000011359
ENSG00000164053
ATR interacting protein
Tissue enhanced
Detected in all
testis:
33.3
AURKB
ENSSSCG00000028924
ENSG00000178999
Aurora kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
31.7
BARD1
ENSSSCG00000016170
ENSG00000138376
BRCA1 associated RING domain 1
Tissue enhanced
Detected in all
lymphoid tissue:
21.2
BEND3
ENSSSCG00000031159
ENSG00000178409
BEN domain containing 3
Low tissue specificity
Detected in all
BIRC5
ENSSSCG00000040486
ENSG00000089685
Baculoviral IAP repeat-containing protein 5
Tissue enhanced
Detected in many
lymphoid tissue:
20.5
testis:
43.3
BMP2K
ENSSSCG00000027722
ENSG00000138756
BMP2 inducible kinase
Low tissue specificity
Detected in all
BORA
ENSSSCG00000025120
ENSG00000136122
Bora, aurora kinase A activator
Low tissue specificity
Detected in all
BRCA1
ENSSSCG00000022101
ENSG00000012048
BRCA1, DNA repair associated
Low tissue specificity
Detected in all
BRCA2
ENSSSCG00000029039
ENSG00000139618
BRCA2, DNA repair associated
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
BUB1B
ENSSSCG00000004782
ENSG00000156970
BUB1 mitotic checkpoint serine/threonine kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
29.6
testis:
17.7
CCNB2
ENSSSCG00000004588
ENSG00000157456
G2/mitotic-specific cyclin-B2
Tissue enhanced
Detected in many
lymphoid tissue:
14.0
testis:
48.3
CCNE2
ENSSSCG00000006095
ENSG00000175305
G1/S-specific cyclin-E2
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
CCNF
ENSSSCG00000026326
ENSG00000162063
Cyclin F
Tissue enhanced
Detected in many
epididymis:
32.5
lymphoid tissue:
15.4
CD52
ENSSSCG00000040957
ENSG00000169442
CAMPATH-1 antigen precursor
Group enriched
Detected in some
ductus deferens:
181.8
epididymis:
47.2
CDC20
ENSSSCG00000003949
ENSG00000117399
Cell division cycle protein 20 homolog
Tissue enhanced
Detected in many
testis:
33.1
CDC25C
ENSSSCG00000014329
ENSG00000158402
M-phase inducer phosphatase 3
Tissue enhanced
Detected in many
testis:
29.3
CDC42SE1
ENSSSCG00000031881
ENSG00000197622
CDC42 small effector protein 1
Low tissue specificity
Detected in all
CDCA2
ENSSSCG00000009653
ENSG00000184661
Cell division cycle associated 2
Group enriched
Detected in many
lymphoid tissue:
14.7
testis:
44.3
CDCA7
ENSSSCG00000015961
ENSG00000144354
Cell division cycle associated 7
Tissue enhanced
Detected in all
lymphoid tissue:
34.3
CDCA8
ENSSSCG00000032909
ENSG00000134690
Cell division cycle associated 8
Tissue enhanced
Detected in many
lymphoid tissue:
20.0
testis:
11.2
upper respiratory system:
12.6
CDKN3
ENSSSCG00000005047
ENSG00000100526
Cyclin-dependent kinase inhibitor 3
Tissue enhanced
Detected in all
testis:
63.9
CDT1
ENSSSCG00000002651
ENSG00000167513
Chromatin licensing and DNA replication factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
CEACAM16
ENSSSCG00000003081
ENSG00000213892
Carcinoembryonic antigen related cell adhesion molecule 16
Tissue enhanced
Detected in many
kidney:
16.8
CENPA
ENSSSCG00000038543
ENSG00000115163
Centromere protein A
Tissue enhanced
Detected in many
lymphoid tissue:
23.7
CENPE
ENSSSCG00000023296
ENSG00000138778
Centromere protein E
Tissue enhanced
Detected in many
large intestine:
15.5
lymphoid tissue:
29.2
CENPF
ENSSSCG00000015581
ENSG00000117724
Centromere protein F
Tissue enhanced
Detected in many
large intestine:
19.1
lymphoid tissue:
41.0
testis:
22.4
CENPH
ENSSSCG00000027147
ENSG00000153044
Centromere protein H
Low tissue specificity
Detected in many
CENPI
ENSSSCG00000012491
ENSG00000102384
Centromere protein I
Low tissue specificity
Detected in all
CENPL
ENSSSCG00000015496
ENSG00000120334
Centromere protein L
Tissue enhanced
Detected in many
lymphoid tissue:
11.4
testis:
8.4
CENPN
ENSSSCG00000039216
ENSG00000166451
Centromere protein N
Tissue enhanced
Detected in many
choroid plexus:
13.5
CENPO
ENSSSCG00000008579
ENSG00000138092
Centromere protein O
Tissue enhanced
Detected in many
lymphoid tissue:
14.8
CENPT
ENSSSCG00000002768
ENSG00000102901
Centromere protein T
Tissue enhanced
Detected in all
lymphoid tissue:
27.1
testis:
22.3
CENPU
ENSSSCG00000015785
ENSG00000151725
Centromere protein U
Tissue enhanced
Detected in many
testis:
27.3
CENPW
ENSSSCG00000035700
ENSG00000203760
Centromere protein W
Low tissue specificity
Detected in many
CEP55
ENSSSCG00000010477
ENSG00000138180
Centrosomal protein 55
Tissue enhanced
Detected in many
testis:
34.9
CEP72
ENSSSCG00000031800
ENSG00000112877
Centrosomal protein 72
Tissue enhanced
Detected in some
epididymis:
8.9
lens:
12.3
stomach:
13.2
testis:
28.0
CHAF1A
ENSSSCG00000013509
ENSG00000167670
Chromatin assembly factor 1 subunit A
Tissue enhanced
Detected in all
testis:
28.8
CHAF1B
ENSSSCG00000012056
ENSG00000159259
Chromatin assembly factor 1 subunit B
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
CHEK2
ENSSSCG00000034864
ENSG00000183765
Serine/threonine-protein kinase Chk2
Low tissue specificity
Detected in all
CHTF18
ENSSSCG00000008010
ENSG00000127586
Chromosome transmission fidelity factor 18
Low tissue specificity
Detected in many
CIP2A
ENSSSCG00000033593
ENSG00000163507
Cell proliferation regulating inhibitor of protein phosphatase 2A
Tissue enhanced
Detected in all
lymphoid tissue:
20.0
CKAP2
ENSSSCG00000009378
ENSG00000136108
Cytoskeleton associated protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.9
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